Barry Linnane

Viruses are the major cause of respiratory illnesses in children under the age of five years and yet little is known about the impact of viruses on children with CF. Viruses have been well studied in other chronic lung conditions such as asthma and recent evidence suggests that Human Rhinovirus (HRV) may have a significant impact on the development of asthma and recurrent wheezing in young children. The main aims of the study are to examine the prevalence of different HRV species in young children with CF and to examine the impact of different HRV species on clinical outcomes in young children with CF.

Summary: SHIELD CF is an ambitious long term translational research programme based in NCRC and running in the CF centres in OLCHC, Tallaght and Limerick. SHIELD CF is based around our annual assessment service, which includes a range of blood tests, x-rays, lung function tests and a bronchoscopy in children who cannot produce sputum specimens. Children are followed up until adulthood. All samples that are taken are catalogued and stored in a specialised biobank for current and future use. In parallel to our clinical sample collection, we are collecting a wide array of clinical information about our patients including complications of the disease and access to medical care. The design of the program allows for a significant degree of collaboration with national and international colleagues in an effort to gain a greater understanding of lung disease in children with CF.

In recent years we have come to understand that a vast array of bacteria lives in our airways – even in healthy people. It has become clear that the interaction between the healthy and harmful bacteria in the lungs is complex. We are conducting a long term and very wide-ranging study in children with CF looking at how these bacteria vary over time and whether they are related to lung inflammation, changes in antibiotic use and lung function at school age.

Bronchoalveolar lavage fluid is collected when salt water is instilled temporarily in the lungs during a bronchoscopy procedure. It collects the proteins and bacteria from the lower airways that otherwise could not be collected. This is potentially a very useful test for clinical trials of new medications in children with CF, but there are several different approaches internationally to the way the test is performed. This multicentre study seeks to determine if different ways of handling and processing the fluid impact on its utility as a marker of lung pathology.

Lots of substances that are produced in the body are excreted in the urine. This has been shown to be true of markers of lung damage in people with lung diseases. This is of significant interest to doctors looking after children with CF as the collection of urine is a painless and harmless procedure, urine is always accessible, and it is an easy fluid to work with. This study is looking to collect information about what substances are in the urine, how they naturally vary over time and whether we can see any patterns in these substances relating to lung infection and inflammation in children with CF. We are working with a company called Mologic in the UK who have experience in this area and are currently working on a similar study to this in adults with CF.

This is a longitudinal study looking at a type of enzyme called a protease. Different types of proteases such as neutrophil elastase, are risk factors for lung damage in children with CF. Presently not a lot is known about the role of other proteases in the preschool CF lung. The study is designed to establish the degree and pattern of protease and anti-protease activity (PAPA) in the lungs of preschool children with CF, and to determine if specific proteases or anti-proteases are associated with either pulmonary infection or clinical disease parameters. The study also proposes to determine whether markers of PAPA can be detected in urine.

Cystic fibrosis is a common inherited life threatening disease which is particularly common in Ireland. People with CF have a mutation in a gene that produces a protein called cystic fibrosis transmembrane conductance protein or CFTR. CFTR regulates the movement of salt in and out of cells. When CFTR doesn’t work well the result is thick, sticky mucus in the respiratory, digestive and reproductive systems, and inability to fight lung infections. Medications have now been designed to specifically target the CFTR protein. These are called CTR modulators. One such modulator is Orkambi, which has recently been approved to treat children over 6 years in Ireland. In this study we are using a new type of specialised lung function technique called ‘multiple breath washout’ (MBW) to look at the lung function of children aged 6-11 years with CF. Children will undergo MBW and a new form of low dose CT scanning called ‘spirometrically controlled CT’ before they commence on Orkmabi. In the first study of its kind in the world, we will be working with colleagues in Rotterdam, London and Cincinnati to assess the effects of Orkambi on the lung structure and lung function of these Irish children for two years following commencement of Orkambi in a real world setting.

The introduction of promising new medications to treat the basic defect in people with CF holds great promise to improve the survival and health of our patients with CF. New CF treatment such as Orkambi are currently only available for CF patients with the most common mutations. Furthermore only individuals with common or well-recognised mutations are being recruited to clinical trials of these new investigational medications. There are likely to be a significant group of children and adults with rarer mutations who may be left behind, with no prospect of having new drugs licensed for use in these people. What is required here is a patient specific ‘test’ to determine whether an individual may benefit from treatment with a given drug. The purpose of this research is to create a repository or “bank” of a type of stem cell called “induced pluripotent stem cells” or iPSCs. Stem cells are special kinds of cells that can renew themselves. Under certain experimental conditions, iPSCs can be directed to grow into any type of tissue or organ. In the case of this study, we are working with colleagues in RCSI and Boston University to develop a special type of lung cell which can readily be used to determine whether the child’s own lung cells may respond to new CF drugs. Ultimately, we would like to develop a test that can be offered to all patients with cystic fibrosis, particularly those with rare mutations not currently able to avail of approved drugs, to determine whether or not they will respond to a given drug.

RECAP is a new joint project between our CF clinical team and our CF Basic Science core in NCRC led by Dr Judith Coppinger. The team has discovered that there are small capsules within cells called exosomes. These exosomes are released by lung cells from people with CF and can help regulate inflammation. Exosomes form part of a cell-to-cell communication system used by most cells to send messages across the human body. Understanding their role promises to improve our understanding of many diseases and how we treat them. These small exosomes are carriers of proteins and other signals that can impact neighbouring inflammatory cells in the fight against infection and may offer the potential to be markers of lung disease in CF. From our research we have discovered that CF cells produce more of these exosomes than healthy cells. Using state of the art scientific technologies, we examined what protein molecules are contained in these exosomes and found many proteins are involved in immune cell function and inflammation. We are now using samples collected through SHIELD CF in children of different ages, some of whom are on new CF modifier drugs to understand this phenomenon in greater detail and how exosomes may cause disease in CF and respond to treatment strategies. We hope to determine in the future whether certain exosomes will help us to non-invasively determine how patients are doing in terms of lung inflammation and damage.

Understanding early lung disease in CF is an international focus to try and tailor treatment to slow or prevent decline in lung function. In Ireland, we currently have limited capacity to formally assess early lung disease in this group. In recent years, there has been a move towards closer monitoring and active treatment in younger patients with CF, in an effort to improve long term survival. Lung Clearance Index (LCI) is a lung function measurement performed using the multiple breath washout (MBW) method. The MBW technique is an effort independent, low-risk, non-invasive procedure performed on spontaneously breathing children. The LCI is a value that is used to indicate the performance of the lungs, particularly the smaller airways. LCI is much more sensitive than other established tests for CF lung disease and can be performed in younger children. It is therefore a very helpful test for doctors looking after children with CF. We have recently acquired the equipment for MBW testing (N2) and wish to validate the test in a population of healthy Irish children and in children with CF, both when well and unwell and to compare our results with established values using this equipment.